I am a computational biologist at
Tempus Labs, where I specialize in using machine learning and other computational techniques to analyze, understand and use biological data.
Previously, I was a Research Scientist in the Pharmacology department at the
University of North Carolina and I worked in Shawn Gomez's
lab and Gary Johnson's
lab. I specialized
in bioinformatics with a focus on image analysis, machine learning and quantification of
high-throughput data. I also worked with the
Bioinformatics and Analytics Research Collaborative (BARC) a bioinformatics core facility at UNC.
I do most of my work using R, but have also written code using MATLAB, Perl and Python. You can find a listing of my public projects, publications and open source code here:
Public Projects
-
The Focal Adhesion Analysis Server: A web-based image processing tool dedicated to processing images of focal adhesions. Focal adhesions are a sub-cellular structure that allow individual cells to connect to the environment. This tool has been used to process over 2,000,000 images. Source code available through github.
-
The Dark Kinome Knowledgebase: A website for the disemination of results related to understudied kinases from an NIH-funded consortium. Source code available through github.
- The Dark Kinase Expression Browser: A data browser dedicated understanding understudied kinase expression through data from the GTex and HPM consortiums. The application was developed using the R shiny framework. Source code is available through github.
- Shiny Applications: websites based around the R shiny framework that I've been part of building.
Preview Applications
Source code for the other projects I've worked on are available through
github.
A list of my publications is available through
google scholar.
More details about my work history is available through
LinkedIn.